PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016467
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 119aa    MW: 13271.3 Da    PI: 5.1776
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016467genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.73e-41141131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC +dC++apyfp e+ +kf  v k+FGasnv kll+++ +++red++ssl yeAear+rdPvyG+vg+i+ lq q+e+l++el++++
  DCAR_016467  14 PCAACKLLRRKCLPDCIFAPYFPPEELQKFISVPKIFGASNVAKLLNEVLPHQREDTVSSLSYEAEARLRDPVYGCVGTISILQLQVERLQKELDEAN 111
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  DCAR_016467 112 AE 113
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.44513114IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-4014111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAASFNVVRY DYSPCAACKL LRRKCLPDCI FAPYFPPEEL QKFISVPKIF GASNVAKLLN  60
EVLPHQREDT VSSLSYEAEA RLRDPVYGCV GTISILQLQV ERLQKELDEA NAELVSYA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1483974e-86FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521459.19e-60PREDICTED: LOB domain-containing protein 25
RefseqXP_007216921.17e-60hypothetical protein PRUPE_ppa018381mg
RefseqXP_008230551.17e-60PREDICTED: LOB domain-containing protein 25
SwissprotQ9FML45e-59LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLB9S6409e-60B9S640_RICCO; LOB domain-containing protein, putative
TrEMBLM5XGD27e-60M5XGD2_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s35280.15e-59(Populus trichocarpa)
STRINGPGSC0003DMT4000466441e-58(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-60LBD family protein